CryoET (with Volta phase plate) of near-minimal cells Mycoplasma mycoides JCVI-Syn3A for the development of subtomogram averaging pipelines

  • Dataset ID:DS-10452

Release Date: 2025-07-25

Last Modified: 2025-07-25

key visualization for CryoET (with Volta phase plate) of near-minimal cells Mycoplasma mycoides JCVI-Syn3A for the development of subtomogram averaging pipelines

Photo Caption: Central slab from a representative tomogram of a Mycoplasma mycoides subsp. capri str. GM12 sample with selected set of annotations.

Dataset Overview

Raw movie stacks, tilt series, alignments and cryo-eletron tomograms of synthetically reduced genome cells acquired with the Volta phase plate. JCVI-Syn3A has 493 genes (about half of the genes of the WT Mycoplasma Mycoides Capri GM12). Samples were prepared by plunge-freezing via Leica GP2. Contained data was collected on a Krios G4 using a Falcon 4i detector and SelctrisX energy filter. Tomograms were reconstructed using Aretomo3 v2.2.2. The dataset also includes membrane segmentations created using membrain-seg.

Publications

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Related Databases

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Runs

107 of 107 Runs

Run Name
Tilt Series Quality Score
Annotated Objects
key visualization for 24nov27a_Position_1
24nov27a_Position_1

Run ID: RN-18398

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_10
24nov27a_Position_10

Run ID: RN-18399

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_100
24nov27a_Position_100

Run ID: RN-18400

3 - Moderate
  • membrane
key visualization for 24nov27a_Position_101
24nov27a_Position_101

Run ID: RN-18401

3 - Moderate
  • membrane
key visualization for 24nov27a_Position_102
24nov27a_Position_102

Run ID: RN-18402

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_103
24nov27a_Position_103

Run ID: RN-18403

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_104
24nov27a_Position_104

Run ID: RN-18404

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_105
24nov27a_Position_105

Run ID: RN-18405

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_106
24nov27a_Position_106

Run ID: RN-18406

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_107
24nov27a_Position_107

Run ID: RN-18407

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_108
24nov27a_Position_108

Run ID: RN-18408

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_109
24nov27a_Position_109

Run ID: RN-18409

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_11
24nov27a_Position_11

Run ID: RN-18410

3 - Moderate
  • membrane
key visualization for 24nov27a_Position_110
24nov27a_Position_110

Run ID: RN-18411

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_12
24nov27a_Position_12

Run ID: RN-18412

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_13
24nov27a_Position_13

Run ID: RN-18413

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_14
24nov27a_Position_14

Run ID: RN-18414

4 - Good
  • membrane
key visualization for 24nov27a_Position_15
24nov27a_Position_15

Run ID: RN-18415

5 - Excellent
  • membrane
key visualization for 24nov27a_Position_16
24nov27a_Position_16

Run ID: RN-18416

3 - Moderate
  • membrane
key visualization for 24nov27a_Position_17
24nov27a_Position_17

Run ID: RN-18417

4 - Good
  • membrane
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