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Dataset

PP7 virus-like particles in E. coli at 3.3 Å

  • Dataset ID:DS-10455

Release Date: 2025-11-07

Last Modified: 2025-11-07

key visualization for PP7 virus-like particles in E. coli at 3.3 Å

Photo Caption: Central slab from a representative tomogram of a Escherichia coli BL21(DE3) sample with selected set of annotations.

Dataset Overview

Leviridae PP7 VLP were inoculated into BL21(DE3) E. coli and plunge-frozen at the 3-hour timepoint. The targets for cryoET were selected based on high crowdedness and variable thickness (100-300 nm). The processing pipeline includes AreTomo3 Live, Embrella, copick, octopi, and py2rely. The most abundant geometry- the icosahedral T=3- was refined to 3.3 Å.

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Runs

314 of 314 Runs

Run Name
Tilt Series Quality Score
Objects
key visualization for 25aug25a_Position_1
25aug25a_Position_1

Run ID: RN-14429

5 - Excellent
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_10
25aug25a_Position_10

Run ID: RN-14450

5 - Excellent
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_100
25aug25a_Position_100

Run ID: RN-14472

5 - Excellent
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_100_2
25aug25a_Position_100_2

Run ID: RN-14492

5 - Excellent
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_101
25aug25a_Position_101

Run ID: RN-14513

5 - Excellent
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_101_2
25aug25a_Position_101_2

Run ID: RN-14533

5 - Excellent
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_102
25aug25a_Position_102

Run ID: RN-14551

1 - Very Poor
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_102_2
25aug25a_Position_102_2

Run ID: RN-14570

3 - Moderate
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_103
25aug25a_Position_103

Run ID: RN-14590

1 - Very Poor
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_103_2
25aug25a_Position_103_2

Run ID: RN-14606

5 - Excellent
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_103_3
25aug25a_Position_103_3

Run ID: RN-14625

5 - Excellent
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_104
25aug25a_Position_104

Run ID: RN-14642

5 - Excellent
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_104_2
25aug25a_Position_104_2

Run ID: RN-14660

3 - Moderate
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_104_3
25aug25a_Position_104_3

Run ID: RN-14680

1 - Very Poor
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_104_4
25aug25a_Position_104_4

Run ID: RN-14698

3 - Moderate
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_104_5
25aug25a_Position_104_5

Run ID: RN-14719

1 - Very Poor
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_105
25aug25a_Position_105

Run ID: RN-14735

5 - Excellent
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_105_2
25aug25a_Position_105_2

Run ID: RN-14756

4 - Good
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_106
25aug25a_Position_106

Run ID: RN-14776

5 - Excellent
  • Capsid protein
    GT
  • membrane
key visualization for 25aug25a_Position_106_2
25aug25a_Position_106_2

Run ID: RN-14797

5 - Excellent
  • Capsid protein
    GT
  • membrane
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