Deposition

CZII - CryoET Object Identification Challenge

Deposition ID:CZCDP-10310

Release Date: 2024-10-30

Last Modified: 2024-02-25

key visualization for CZII - CryoET Object Identification Challenge

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

Experimental and simulated training data for the CryoET Object Identification Challenge. Each dataset contains tilt series, alignments, tomograms and ground truth annotations for six protein complexes (Apo-ferritin, Beta-amylase, Beta-galactosidase, cytosolic ribosomes, thyroglobulin and VLP). Curation procedures are described in detail in the accompanying paper. Details on how the dataset is used in the competition are available on the competition page.

Authors

Deposition Data

Annotations:3,624

Tomograms:1,995

Publications

Related Databases

EMDB ID:EMD-41923

Methods Summary

Annotations	Method Type	Method Details	Method Links
2782	Hybrid	hybrid curation using CellCanvas, copick, slabpick, deepfindET, topaz, minislab curation and cryoSPARC	Source Code:slabpick +8 more
491	Automated	Prediction using membrain-seg without rescaling and weights MemBrain_seg_v10_alpha.ckpt	Source Code:membrain-seg +1 more

Deposited Data

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Data Contents

Tilt SeriesAvailable

FramesAvailable

CTFAvailable

AlignmentAvailable

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3,624 of 3,624 Annotations

Annotation Name	Object Shape Type	Method Type	Deposited In
106virus-like capsid Annotation ID: AN-114661 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
105Thyroglobulin Annotation ID: AN-114660 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
104cytosolic ribosome Annotation ID: AN-114659 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
103Beta-galactosidase Annotation ID: AN-114658 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
102Beta-amylase Annotation ID: AN-114657 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
101ferritin complex Annotation ID: AN-114656 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
105virus-like capsid Annotation ID: AN-114527 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_8
104Thyroglobulin Annotation ID: AN-114526 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_8
103cytosolic ribosome Annotation ID: AN-114525 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_8
102Beta-galactosidase Annotation ID: AN-114524 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_8
101ferritin complex Annotation ID: AN-114523 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_8
103cytosolic ribosome Annotation ID: AN-114398 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_7
102Beta-amylase Annotation ID: AN-114397 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_7
101ferritin complex Annotation ID: AN-114396 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_7
105Thyroglobulin Annotation ID: AN-114271 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_5
104cytosolic ribosome Annotation ID: AN-114270 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_5
103Beta-galactosidase Annotation ID: AN-114269 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_5
102Beta-amylase Annotation ID: AN-114268 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_5
101ferritin complex Annotation ID: AN-114267 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_5
106virus-like capsid Annotation ID: AN-114141 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_4