All Depositions

Deposition

CryoLens - simulated training data

  • Deposition ID:CZCDP-10335

Release Date: 2025-11-03

Last Modified: 2025-11-03

key visualization for CryoLens - simulated training data

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

The CryoLens training dataset consists of 14,366 synthetic tomograms containing 5.8 million particle instances across 103 protein structures ranging from 150 kDa to 2.7 MDa, with at least 46,000 instances of each particle type. The data was generated using copick-polnet at 10Å voxel spacing with a signal-to-noise ratio of 5.0, incorporating realistic cryo-ET artifacts including noise and missing wedge effects from a tilt-series range of -60° to +60°. The complete dataset totals approximately 12 terabytes, making it one of the largest synthetic training datasets available for cryo-electron tomography.

Authors

Deposition Data

Annotations:1,737

Tomograms:200

Publications

Not Submitted

Related Databases

  • PDB-1G3I

Methods Summary

Annotations
Method Type
Method Details
Method Links
1737
Simulated
polnet-simulated ground truth
Source Code:polnet
+1 more

Deposited Data

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Data Contents

Tilt SeriesNA
FramesNA
CTFNA
AlignmentAvailable

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1,737 of 1,737 Annotations

Annotation Name
Object Shape Type
Method Type
Deposited In

109Flagellin

Annotation ID: AN-41941

Ground Truth
OrientedPoint
Simulated

108Chromosome partition protein MukB

Annotation ID: AN-41940

Ground Truth
OrientedPoint
Simulated

107potassium channel complex

Annotation ID: AN-41939

Ground Truth
OrientedPoint
Simulated

106transcription preinitiation complex

Annotation ID: AN-41938

Ground Truth
OrientedPoint
Simulated

105GCH1 complex

Annotation ID: AN-41935

Ground Truth
OrientedPoint
Simulated

104Hemagglutinin

Annotation ID: AN-41933

Ground Truth
OrientedPoint
Simulated

103Envelope glycoprotein B

Annotation ID: AN-41930

Ground Truth
OrientedPoint
Simulated

102Glutamate receptor ionotropic, delta-1

Annotation ID: AN-41928

Ground Truth
OrientedPoint
Simulated

101RNA-directed RNA polymerase L

Annotation ID: AN-41927

Ground Truth
OrientedPoint
Simulated

100membrane attack complex

Annotation ID: AN-41926

Ground Truth
OrientedPoint
Simulated

106Inositol 1,4,5-trisphosphate-gated calcium channel ITPR3

Annotation ID: AN-41906

Ground Truth
OrientedPoint
Simulated

105Myosin-7

Annotation ID: AN-41905

Ground Truth
OrientedPoint
Simulated

104Gag-Pol polyprotein

Annotation ID: AN-41904

Ground Truth
OrientedPoint
Simulated

103Neuraminidase

Annotation ID: AN-41903

Ground Truth
OrientedPoint
Simulated

102acetylcholine-gated channel complex

Annotation ID: AN-41902

Ground Truth
OrientedPoint
Simulated

101No mechanoreceptor potential C isoform L

Annotation ID: AN-41901

Ground Truth
OrientedPoint
Simulated

100Surface layer protein

Annotation ID: AN-41900

Ground Truth
OrientedPoint
Simulated

108Inositol 1,4,5-trisphosphate-gated calcium channel ITPR3

Annotation ID: AN-41886

Ground Truth
OrientedPoint
Simulated

107cullin-RING ubiquitin ligase complex

Annotation ID: AN-41885

Ground Truth
OrientedPoint
Simulated

106transcription preinitiation complex

Annotation ID: AN-41884

Ground Truth
OrientedPoint
Simulated
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