All DatasetsDataset: CryoETSim chromatin subset - simulated cryo-electron tomograms of nucleosome arrays and DNA filaments

Run

sample_353

  • Run ID:RN-36047

Release Date: 2026-06-24

Last Modified: 2026-06-24

key visualization for sample_353

Photo Caption: Central slab of tomogram 61479 with selected set of annotations.

Run Overview

Tilt Series

Tilt Quality
5 - Excellent
Tilt Range120° (-60° to 60°)
Tilt Schemedose-symmetric

Tomogram

Samplings Available6.8Å
Tomogram Processing
  • denoised,
  • filtered,
  • raw

Objects

  • double-stranded DNA polynucleotide,
  • nucleosome
Browse Run Contents

Tomograms

4 of 4 Tomograms

Tomogram Name
Deposition Date
Alignment ID
Voxel Spacing
Reconstruction Method
Post Processing
Software
key visualization for sample_353

61482 WBP Denoised

Tomogram ID: TM-61482
Author Submitted
  • Frosina Stojanovska,
  • ... ,
  • Julia Mahamid,
  • Anna Kreshuk,
  • Judith B. Zaugg
2026-06-24

AL-35687

6.8Å
(600, 600, 104)px
WBP
denoised
Reconstruction SoftwareIMOD
Processing SoftwareCryoSiam DenseSimSiam
key visualization for sample_353

61481 WBP Filtered

Tomogram ID: TM-61481
Author Submitted
  • Frosina Stojanovska,
  • ... ,
  • Julia Mahamid,
  • Anna Kreshuk,
  • Judith B. Zaugg
2026-06-24

AL-35687

6.8Å
(600, 600, 104)px
WBP
filtered
Reconstruction SoftwareIMOD
Processing SoftwareIMOD (CTF-corrected)
key visualization for sample_353

61480 WBP Raw

Tomogram ID: TM-61480
Author Submitted
  • Frosina Stojanovska,
  • ... ,
  • Julia Mahamid,
  • Anna Kreshuk,
  • Judith B. Zaugg
2026-06-24

AL-35687

6.8Å
(600, 600, 104)px
WBP
raw
Reconstruction SoftwareIMOD
Processing SoftwareIMOD (noisy)
key visualization for sample_353

61479 WBP Raw

Tomogram ID: TM-61479
Author Submitted
  • Frosina Stojanovska,
  • ... ,
  • Julia Mahamid,
  • Anna Kreshuk,
  • Judith B. Zaugg
2026-06-24

AL-35687

6.8Å
(600, 600, 104)px
WBP
raw
Reconstruction SoftwareIMOD
Processing SoftwareIMOD (clean)