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Deposition

Automated Synaptic Vesicle Segmentation in Synaptosomes

  • Deposition ID:CZCDP-10330

Release Date: 2025-02-19

Last Modified: 2025-02-19

key visualization for Automated Synaptic Vesicle Segmentation in Synaptosomes

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

This deposition contains segmentations of synaptic vesicles in cryo ET data of synaptosomes. The segmentations were produced with SynapseNet by re-training its vesicle segmentation network on ca. 50 synaptosome tomograms via unsupervised domain adaptation. TThe vesicles are segmented as instances: each vesicle is assigned a unique id per tomogram by SynapseNet (however, represented as binary masks on the cryoET data portal), each vesicle is also assigned its centroid calculated using the SynapseNet instances. For more details on SynapseNet check out the GitHub repository and the preprint linked below.

Deposition Data

Annotations:70

Related Databases

Not Submitted

Methods Summary

Annotations
Method Type
Method Details
Method Links
70
Automated
Prediction using SynapseNet after unsupervised domain adaptation

Deposited Data

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Data Contents

Tilt SeriesAvailable
FramesAvailable
CTFNA
AlignmentAvailable

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70 of 70 Annotations

Annotation Name
Object Shape Type
Method Type
Deposited In

101synaptic vesicle

Annotation ID: AN-69570

InstanceSegmentation
Automated

101synaptic vesicle

Annotation ID: AN-69570

SegmentationMask
Automated

101synaptic vesicle

Annotation ID: AN-69569

SegmentationMask
Automated

101synaptic vesicle

Annotation ID: AN-69569

InstanceSegmentation
Automated

101synaptic vesicle

Annotation ID: AN-69568

SegmentationMask
Automated

101synaptic vesicle

Annotation ID: AN-69568

InstanceSegmentation
Automated

101synaptic vesicle

Annotation ID: AN-69567

InstanceSegmentation
Automated

101synaptic vesicle

Annotation ID: AN-69567

SegmentationMask
Automated

101synaptic vesicle

Annotation ID: AN-69566

SegmentationMask
Automated

101synaptic vesicle

Annotation ID: AN-69566

InstanceSegmentation
Automated

101synaptic vesicle

Annotation ID: AN-69565

SegmentationMask
Automated

101synaptic vesicle

Annotation ID: AN-69565

InstanceSegmentation
Automated

101synaptic vesicle

Annotation ID: AN-69564

InstanceSegmentation
Automated

101synaptic vesicle

Annotation ID: AN-69564

SegmentationMask
Automated

101synaptic vesicle

Annotation ID: AN-69563

SegmentationMask
Automated

101synaptic vesicle

Annotation ID: AN-69563

InstanceSegmentation
Automated

101synaptic vesicle

Annotation ID: AN-69562

SegmentationMask
Automated

101synaptic vesicle

Annotation ID: AN-69562

InstanceSegmentation
Automated

101synaptic vesicle

Annotation ID: AN-69561

SegmentationMask
Automated

101synaptic vesicle

Annotation ID: AN-69561

InstanceSegmentation
Automated
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