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Deposition

Training annotations and octopi predictions of ribosomes in unroofed human cells

  • Deposition ID:CZCDP-10333

Release Date: 2025-09-17

Last Modified: 2025-09-17

key visualization for Training annotations and octopi predictions of ribosomes in unroofed human cells

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

This deposition provides manual and automated annotations of cytosolic ribosomes in cryo-electron tomograms of unroofed human cells. Manual annotations were created using the copick-toolkit and used to train an octopi object detection model. The trained model was used to localize candidate particles, which were then subjected to subtomogram averaging and classification using RELION 5.0. The final set of automated annotations is the set of particles that contributed to the highest-quality ribosome average (7.5 Å final resolution).

Deposition Data

Annotations:44

Publications

Not Submitted

Related Databases

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Methods Summary

Annotations
Method Type
Method Details
Method Links
38
Automated
octopi particle prediction → RELION 5 subtomogram averaging and classification
Source Code:RELION
+2 more
6
Manual
manual particle picking using the copick-toolkit
Source Code:Copick documentation
+2 more

Deposited Data

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Data Contents

Tilt SeriesAvailable
FramesAvailable
CTFAvailable
AlignmentAvailable

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44 of 44 Annotations

Annotation Name
Object Shape Type
Method Type
Deposited In

100cytosolic ribosome

Annotation ID: AN-100320

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-100318

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-100316

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-100314

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-100312

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-100310

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-100353

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100352

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100351

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100350

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100349

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100348

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100347

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100346

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100345

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100344

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100343

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100342

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100341

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-100340

OrientedPoint
Automated
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